PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 206aa    MW: 22388.3 Da    PI: 7.412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895911genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.1e-11921681897
                --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +p kf++eh   ++++s++ t+ ++ g+ W v+l  +  + +++ ++G  +F ka++L eg +++F+++g++ f  +v vf
  462895911  92 MPDKFVQEHlTDSSPSSQKATIFSRVGKFWHVEL--DPDRPGVLQGDGRARFLKAHDLSEGNVLLFRYEGNMLF--RVEVF 168
                69********555568899***************..*********************************99988..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.006580171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1191170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1592171IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-1192168IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-992168No hitNo description
PfamPF023628.0E-992167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAAFSVRRRP RYAVVRLSPS CLDELVNASN TSLQTTRLYN ACTRCVRDPR ARAHLTICAA  60
RSGGVRGAAR LGGEEGGGTA QVLLVSPLGK EMPDKFVQEH LTDSSPSSQK ATIFSRVGKF  120
WHVELDPDRP GVLQGDGRAR FLKAHDLSEG NVLLFRYEGN MLFRVEVFLQ SGLLEECEAA  180
AAIRTDDIAG PSEPQEGESG PLFQSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700752.13e-41PREDICTED: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL73e-33Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLK3Y2K37e-41K3Y2K3_SETIT; Uncharacterized protein
STRINGSi008427m2e-40(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187